3.7.1.2 Top 2000 variance genes

In this section, most genes are kept for the UMAP. Only those with a standard deviation lower than 0.3 are removed, leading to a dataset with 1999 genes.

Figure 3.254: UMAP for 5 neighbors

Figure 3.255: UMAP for 10 neighbors

Figure 3.256: UMAP for 15 neighbors

Figure 3.257: UMAP for 20 neighbors