3.3.1.1.9 TCGA-OV

For the whole TCGA-OV dataset, the differential expression analysis is done either considering no covariate (all female), or primary diagnosis.

3.3.1.1.9.1 No covariate
Volcano plot. 203 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 2 are highlighted in red and available in [this table](DT/resultsDeseq2Vnn1HighVsLowProjectIdTcgaOvNoCovKnitPostDeseq2TemplatePlotVolcanoDeseq2.html).

Figure 3.195: Volcano plot. 203 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 2 are highlighted in red and available in this table.

  • Enrichr results for all deregulated genes are available here
  • Enrichr results for upregulated genes are available here
  • Enrichr results for downregulated genes are available here
  • g:Profiler results for all deregulated genes are available here
  • g:Profiler results for all upregulated genes are available here
  • g:Profiler results for all downregulated genes are available here
  • g:Profiler results for comparison of the three queries above are available here