3.7 UMAP

UMAP using different number of neighbors

3.7.1 All selected projects

3.7.1.1 Most genes

In this section, most genes are kept for the UMAP. Only those with a standard deviation lower than 0.3 are removed, leading to a dataset with 36886 genes.

Figure 3.250: UMAP for 5 neighbors

Figure 3.251: UMAP for 10 neighbors

Figure 3.252: UMAP for 15 neighbors

Figure 3.253: UMAP for 20 neighbors