3.3.1.1.3 TCGA-BRCA

For the whole TCGA-BRCA dataset, the differential expression analysis is done either considering only gender as covariate, or both gender and primary diagnosis.

3.3.1.1.3.1 Gender covariate
Volcano plot. 471 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 2 are highlighted in red and available in [this table](DT/resultsDeseq2Vnn1HighVsLowProjectIdTcgaBrcaGenderCovKnitPostDeseq2TemplatePlotVolcanoDeseq2.html).

Figure 3.183: Volcano plot. 471 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 2 are highlighted in red and available in this table.

  • Enrichr results for all deregulated genes are available here
  • Enrichr results for upregulated genes are available here
  • Enrichr results for downregulated genes are available here
  • g:Profiler results for all deregulated genes are available here
  • g:Profiler results for all upregulated genes are available here
  • g:Profiler results for all downregulated genes are available here
  • g:Profiler results for comparison of the three queries above are available here