4.2.2.3 DEA

4.2.2.3.1 Fluoxetine VS Vehicle with Tissue and Treatment as covariates
4.2.2.3.1.1 Apgelm shrinkage
## [1] "Intercept"                        "tissue_Brain.BLA_vs_Brain.ACC"   
## [3] "tissue_Brain.CA1_vs_Brain.ACC"    "tissue_Brain.CeA_vs_Brain.ACC"   
## [5] "tissue_Brain.NAc_vs_Brain.ACC"    "tissue_Brain.PrL_vs_Brain.ACC"   
## [7] "treatment_Shocked_vs_Non.Shocked" "drug_Fluoxetine_vs_Vehicle"
Volcano plot. 224 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 0.5 are highlighted in red and available in [this table](DT/resultsRnaseqSRP057486FluoxetineVsVehicleWithTissueAndTreatmentAsCovariatesKnitPostDeseq2PlotVolcanoDeseq2.html).

Figure 4.12: Volcano plot. 224 significant genes according to Pvalue < 0.05 and |log2FoldChange| > 0.5 are highlighted in red and available in this table.

  • Enrichr results for all deregulated genes are available here
  • Enrichr results for upregulated genes are available here
  • Enrichr results for downregulated genes are available here
  • g:Profiler results for all deregulated genes are available here
  • g:Profiler results for all upregulated genes are available here
  • g:Profiler results for all downregulated genes are available here
  • g:Profiler results for comparison of the three queries above are available here