4.2 RNA-Seq datasets

Library strandedeness is evaluated using Salmon with automatic library type detection. Since all samples for each dataset is detected as the same type as the others, automatic library type detection is considered consistent for these datasets and will be trusted.

$ grep "Automatically detected most likely library type as" out/salmon/*/*/*/*/*/*/logs/salmon_quant.log | sed "s|/logs/salmon_quant.log.*Automatically detected most likely library type as |\t|g"
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123954    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123955    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123956    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123957    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123958    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123959    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123960    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123961    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123962    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123963    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123964    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123965    ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497505    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497506    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497507    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497508    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497509    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497510    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497511    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497512    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497513    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497514    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497515    IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497516    IU
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982298   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982299   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982300   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982301   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982302   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982303   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982304   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982305   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982306   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982307   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982308   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982309   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982310   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982311   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982312   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982313   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982314   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982315   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982316   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982317   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982318   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982319   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982320   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982321   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982322   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982323   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982324   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982325   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982326   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982327   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982328   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982329   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982330   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982331   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982332   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982333   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982334   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982335   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982336   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982337   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982338   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982339   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982340   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982341   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982342   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982343   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982344   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982345   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982346   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982347   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982348   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982349   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982350   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982351   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982352   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982353   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982354   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982355   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982356   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982357   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982358   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982359   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982360   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982361   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982362   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982363   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982364   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982365   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982366   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982367   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982368   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982369   U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927116    U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927117    U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927118    U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927119    U