4.2 RNA-Seq datasets
Library strandedeness is evaluated using Salmon with automatic library type detection. Since all samples for each dataset is detected as the same type as the others, automatic library type detection is considered consistent for these datasets and will be trusted.
$ grep "Automatically detected most likely library type as" out/salmon/*/*/*/*/*/*/logs/salmon_quant.log | sed "s|/logs/salmon_quant.log.*Automatically detected most likely library type as |\t|g"
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123954 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123955 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123956 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123957 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123958 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123959 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123960 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123961 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123962 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123963 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123964 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR4123965 ISF
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497505 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497506 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497507 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497508 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497509 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497510 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497511 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497512 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497513 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497514 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497515 IU
out/salmon/quant_fastq_pe_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/pe_-t_sanger_-q_20/sra-tools/fastq-dump_pe/SRR6497516 IU
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982298 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982299 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982300 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982301 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982302 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982303 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982304 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982305 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982306 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982307 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982308 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982309 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982310 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982311 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982312 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982313 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982314 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982315 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982316 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982317 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982318 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982319 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982320 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982321 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982322 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982323 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982324 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982325 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982326 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982327 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982328 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982329 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982330 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982331 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982332 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982333 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982334 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982335 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982336 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982337 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982338 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982339 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982340 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982341 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982342 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982343 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982344 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982345 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982346 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982347 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982348 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982349 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982350 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982351 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982352 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982353 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982354 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982355 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982356 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982357 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982358 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982359 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982360 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982361 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982362 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982363 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982364 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982365 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982366 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982367 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982368 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-GRCm38-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1982369 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927116 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927117 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927118 U
out/salmon/quant_fastq_se_-l_A_--validateMappings_--numGibbsSamples_20_--gcBias_salmon-index-Rnor6-ensembl-r102/sickle/se_-t_sanger_-q_20/sra-tools/fastq-dump_se/SRR1927119 U