4.2.1.3 DTU

4.2.1.3.1 Fluoxetine VS Methylcellulose

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## 
## FALSE  TRUE 
##  6845    13

## DataFrame with 6 rows and 2 columns
##                        log2FC     qvalue
##                     <numeric>  <numeric>
## ENSRNOT00000080683 -0.1029960 0.00320513
## ENSRNOT00000085263 -0.0992650 0.00320513
## ENSRNOT00000018237 -0.0867117 0.00320513
## ENSRNOT00000084120 -0.0857084 0.00320513
## ENSRNOT00000015453 -0.0765245 0.00320513
## ENSRNOT00000008886  0.0660385 0.00320513

##        sign.lfc
## sig       -1    0    1
##   FALSE 3432    7 3406
##   TRUE     7    0    6

Figure 4.5: Top upregulated isoforms

Figure 4.6: Top downregulated isoforms

The complete table for all transcripts passing the labelKeep default filter is available here.

Figure 4.7: Distribution of inferential replicates for the top upregulated isoform, for each sample, splitted by condition

Figure 4.8: Distribution of inferential replicates for the top downregulated isoform, for each sample, splitted by condition

Figure 4.9: TPM, isoform proportion and raw counts for the top upregulated isoform, for each sample, splitted by condition

Figure 4.10: TPM, isoform proportion and raw counts for the top downregulated isoform, for each sample, splitted by condition

Figure 4.11: MA-plot with blue-highlighted genes corresponding to those with qvalue < 0.1